NC-Bench and NCfold: A Benchmark and Closed-Loop Framework for RNA Non-Canonical Base-Pair Prediction
Heqin Zhu · Ruifeng Li · Ao Chang · Mingqian Li · Hongyang Chen · Peng Xiong · S. Kevin Zhou
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Heqin Zhu · Ruifeng Li · Ao Chang · Mingqian Li · Hongyang Chen · Peng Xiong · S. Kevin Zhou
Qingguo Qi · Hongyang Chen · Zhao Li
Positional encodings are fundamental to Transformers, yet explicit methods like RoPE can degrade under length extrapolation and may incur extra arithmetic and memory-access overhead. In this paper, we propose Scoped Position Encoding (ScoPE), a novel framework that reimagines structured sparsity...
Bin Chen · Yu Zhang · Hongfei Ye · Huiyang Wang · Wenxi Liu · Hongyang Chen
Logical reasoning is a key capability of large language models, yet current benchmarks focus almost entirely on tasks that just check basic logical consistency and overlook the reflective reasoning required for paradox detection and resolution. To fill the gap, we present ParaSuite, the first pip...
Feifan Luo · Hongyang Chen